Select Publications

  1. Roper J, Tammela T, Akkad A, Almeqdadi M, Santos SB, Jacks T, Yilmaz ÖH  Colonoscopy-based colorectal cancer modeling in mice with CRISPR-Cas9 genome editing and organoid transplantation. Nature Protocols.(2018) 13, 217-234 . PMID:   29300388​
  2. Mana MD, Kuo EY, Yilmaz ÖH  Dietary Regulation of Adult Stem Cells. Curr Stem Cell Rep. (2017) Mar 3(1):1-8. PMID:28966904
  3. Roper J, Yilmaz ÖH Metabolic Teamwork in the Stem Cell Niche. Cell Metabolism. (2017) May 2, Volume 25, Issue 5, p993-994. PMID:28467944 
  4. Roper J​Tammela​ TCetinbas NM​Akkad ARoghanian ARickelt SAlmeqdadi MWu K, Oberli MA, Sánchez-Rivera FJ, Park YKLiang XEng GTaylor MS, Azimi R, Kedrin D, Neupane R, Beyaz SSicinska ET, Suarez Y, Yoo J, Chen L, Zukerberg L, Katajisto P, Deshpande VBass AJ, Tsichlis PN, Lees J, Langer RHynes RO, Chen J, Bhutkar A, Jacks T & Yilmaz ​ÖH​ In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis. Nature Biotechnology. (2017) May 1. PMID:28459449 
  5. Cheng CW and Yilmaz ÖH Starving leukemia to induce differentiation. Nature Medicine. (2017) Jan 6;23(1):14-15. PMID: 28060803
  6. Hu B, Jin C, Li HB, Tong J, Ouyang X, Cetinbas NM, Zhu S, Strowig T, Lam FC, Zhao C, Henao-Mejia J, Yilmaz ÖH, Fitzgerald KA, Eisenbarth SC, Elinav E, and Flavell RA The DNA-sensing AIM2 inflammasome controls radiation-induced cell death and tissue injury.  Science. (2016) Nov 11; 354(6313): 765-768. PMID:  27846608
  7. Beyaz S and Yilmaz ÖH. Dietary regulation of stemness and tumor initiation by the PPAR-d pathway. Clinical Cancer Research. (2016) Oct 4. PMID: 27702819
  8. Cetinbas NM, Sudderth J, Harris RC, Cebeci A, Negri GL, Yılmaz ÖH, DeBerardinis RJ, Sorensen PH Glucose-dependent anaplerosis in cancer cells is required for cellular redox balance in the absence of glutamine.  Sci Rep. (2016) Sep 8;6:32606. PMID: 27605385
  9. Dominguez-Brauer C, Hao Z, Elia AJ, Fortin JM, Nechanitzky R, Brauer PM, Sheng Y, Mana MD, Chio II, Haight J, Pollett A, Cairns R, Tworzyanski L, Inoue S, Reardon C, Marques A, Silvester J, Cox MA, Wakeham A, Yilmaz OH, Sabatini DM, van Es JH, Clevers H, Sato T, Mak TW. (2016) Mule Regulates the Intestinal Stem Cell Niche via the Wnt Pathway and Targets EphB3 for Proteasomal and Lysosomal Degradation.
    Cell Stem Cell. (2016) Aug 4;19(2):205-16. PMID: 27184401

  10. Cangelosi A and Yilmaz ÖH High fat diet and stem cells: Linking diet to intestinal tumor formation.  Cell Cycle. (2016) Jul 2; 15(13): 1657-8. PMCID: PMC4957592 
  11. Beyaz S, Mana MD, Roper J, Kedrin D, Saadatpour A, Hong S-J, Bauer-Rowe KE, Xifaras ME, Akkad A, Pinello L, Katz Y, Shinagare S, Abu-Remaileh M, Lamming D, Dogum R, Guo G, Selig M, Nielsen GP, Gupta N, Ferrone C, Deshpande V, Yuan G-C, Orkin SH, Sabatini DM, and  Yilmaz ÖH High-fat diet enhances stemness and tumorigenicity of intestinal progenitors. Nature. (2016) Mar 3;531(7592): 53-58 PMID:  26935695
  12. Cheng CW and Yilmaz ÖH. IGFBP3 and T1D: Systemic Factors in Colonic Stem Cell Function and Diabetic Enteropathy.  Cell Stem Cell. (2015) Oct 1;17(4): 379-80 PMID:   26431180  
  13. Golovko D, Kedrin D, Yilmaz ÖH, Roper J Colorectal cancer models for novel drug discovery.  Expert Opin Drug Discov(2015) Aug 21:1-13. [Epub ahead of print] PMID: 26295972
  14. Mihaylova MM, Sabatini DM, and Yilmaz ÖH Dietary and Metabolic Control of Stem Cell Function in Physiology and Disease. Cell Stem Cell. (2014) Mar 6; 14(3):292-305. PMCID: PMC3992244
  15. Curry NL, Mino-Kenudson M, Oliver TG, Yilmaz ÖH, Yilmaz VO, Moon JY, Jacks T, Sabatini DM, Kalaany NY  PTEN-null Tumors Cohabiting the Same Lung Display Differential Akt Activation and Sensitivity to Dietary Restriction. Cancer Discov. (2013) Aug;3(8):908-21. PMCID: PMC3743121
  16. Arnason T, Pino MS, Yilmaz ÖH, Kirley SD, Rueda BR, Chung DC, Zukerberg LR  Cables1 is a tumor suppressor gene that regulates intestinal tumor progression in Apcmin mice.  Cancer Biology & Therapy. 14(7), 672-678. (2013) Jul;14(7):672-8. PMCID: PMC3742496
  17. Birsoy K, Wang T, Possemato R, Yilmaz ÖH, Koch CE, Chen WW, Hutchins AW, Gultekin Y, Peterson TR, Carette JE, Brummelkamp TR, Clish CB, Sabatini DM  MCT1-mediated transport of a toxic molecule is an effective strategy for targeting glycolytic tumors. Nature Genetics. (2013) Jan;45(1):104-8. PMCID: PMC3530647
  18. Yilmaz ÖH*, Katajisto P*, Lamming DW, Gültekin,Y, Bauer-Rowe KE, Sengupta, S, Birsoy, K, Durun, A, Yilmaz, VO, Selig M, Nielsen GP, Mino-Kenudson M, Zukerberg LR, Bhan AK, Deshpande V, and Sabatini DM mTORC1 in the Paneth cell niche couples intestinal stem-cell function to calorie intake. Nature. (2012) Jun 28;486(7404):490-5. PMCID: PMC3387287
  19. Kelly PJ, Shinagare S, Sainani N, Hong X, Ferrone C, Yilmaz ÖH, Fernandez-Del Castillo C, Lauwers GY, Deshpande V Cystic Papillary Pattern in Pancreatic Ductal Adenocarcinoma: A Heretofore Undescribed Morphologic Pattern That Mimics Intraductal Papillary Mucinous Carcinoma.  Am J Surg Pathol. (2012) 36(5) 696-701
  20. Lee JY, Nakada D, Yilmaz ÖH, Tothova Z, Lim MS, Gilliland DG, Morrison SJ mTOR-induced tumor suppressor response contributes to the depletion of hematopoietic stem cells after Pten deletion.  Cell Stem Cell. (2010) 7(5), 593-605. PMCID: PMC2995996
  21. Oravecz-Wilson KI*, Philips ST*, Yilmaz ÖH*, Li L, Lucas PC, Sitwala K, Downing JR, Morrison SJ, Ross TS Persistence of Leukemia-initiating Cells in a Novel Mouse Model of Imantinib-Responsive Myeloid Leukemia. Cancer Cell. (2009) 16(2): 137-148. PMCID: PMC2763369
  22. Levi B, Yilmaz ÖH, Duester G and Morrison SJ Aldehyde dehydrogenase1a1 is dispensable for murine nervous and hematopoietic stem cell function. Blood. (2009) 113(8), 1670-1680. PMCID: PMC2647681
  23. Kiel MJ, Yilmaz ÖH, and Morrison SJ  CD150 negative cells are transiently reconstituting multipotent progenitors with little or no stem cell activity. Blood. (2008) 111(8), 4413-4414. PMCID: PMC2293285
  24. Yilmaz ÖH and Morrison SJ The PI-3kinase pathway in hematopoietic stem cells and leukemia-initiating cells: a mechanistic difference between normal and cancer stem cells. Blood Cells Mol Dis.(2008) 41(1), 73-76. PMCID: PMC2517145
  25. Kim I, He S, Yilmaz ÖH, Kiel MJ, and Morrison SJ Enhanced purification of fetal liver hematopoietic stem cells using SLAM family receptors. Blood. (2006) 108(2), 737-744.  PMCID: PMC1895480
  26. Yilmaz ÖH, Valdez R, Thiesen BK, Guo W, Ferguson DO, Wu H, and Morrison SJ Pten dependence distinguishes haematopoietic stem cells from leukaemia-initiating cells. Nature. (2006) 441, 475-482. [Cover Article]. PMID:  16598206
  27. Yilmaz ÖH, Kiel MJ, and Morrison SJ  SLAM family markers are conserved among hematopoietic stem cells from old and reconstituted mice and markedly increase their purity.  Blood. (2006) 107, 924-930. PMID:  16219798
  28. Kiel MJ*, Yilmaz ÖH*, Iwashita T*, Terhorst C, and Morrison SJ  SLAM Family Receptors Distinguish Hematopoietic Stem and Progenitor Cells and Reveal Endothelial Niches for Stem Cells. Cell. (2005) 121, 1109-1121. PMID:  15989959
  29. Kim I, Yilmaz ÖH, and Morrison SJ  CD144 (VE-cadherin) is transiently expressed by fetal liver stem cells. Blood. (2005) 106(3), 903-905. PMCID:   PMC1895147
  30. Kiel MJ, Iwashita T, Yilmaz ÖH, and Morrison SJ Spatial differences in hematopoiesis but not in stem cells indicate a lack of regional patterning in definitive hematopoietic stem cells. Dev Biol. (2005) 283, 29-39. PMID:  15913595

*equal contributors, co-first authors

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